Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs.

Lee, Benjamin D; Neri, Uri; Roux, Simon; Wolf, Yuri I; Camargo, Antonio Pedro; Krupovic, Mart; Simmonds, Peter; Kyrpides, Nikos; Gophna, Uri; Dolja, Valerian V; Koonin, Eugene V.

Cell ; 186(3): 646-661.e4, 2023 02 02.

Artigo em Inglês | MEDLINE | ID: mdl-36696902

2.

Et tu, Vibrio cholerae? Kin-cannibalism and a bacterial secretion system.

Gophna, Uri.

Cell ; 185(22): 4039-4040, 2022 10 27.

Artigo em Inglês | MEDLINE | ID: mdl-36306729

3.

Expansion of the global RNA virome reveals diverse clades of bacteriophages.

Neri, Uri; Wolf, Yuri I; Roux, Simon; Camargo, Antonio Pedro; Lee, Benjamin; Kazlauskas, Darius; Chen, I Min; Ivanova, Natalia; Zeigler Allen, Lisa; Paez-Espino, David; Bryant, Donald A; Bhaya, Devaki; Krupovic, Mart; Dolja, Valerian V; Kyrpides, Nikos C; Koonin, Eugene V; Gophna, Uri.

Cell ; 185(21): 4023-4037.e18, 2022 10 13.

Artigo em Inglês | MEDLINE | ID: mdl-36174579

4.

Horizontal Gene Transfer in Archaea-From Mechanisms to Genome Evolution.

Gophna, Uri; Altman-Price, Neta.

Annu Rev Microbiol ; 76: 481-502, 2022 09 08.

Artigo em Inglês | MEDLINE | ID: mdl-35667126

5.

Isolation of a virus causing a chronic infection in the archaeal model organism Haloferax volcanii reveals antiviral activities of a provirus.

Alarcón-Schumacher, Tomas; Naor, Adit; Gophna, Uri; Erdmann, Susanne.

Proc Natl Acad Sci U S A ; 119(35): e2205037119, 2022 08 30.

Artigo em Inglês | MEDLINE | ID: mdl-35994644

6.

Microbiome-related aspects of locust density-dependent phase transition.

Lavy, Omer; Lewin-Epstein, Ohad; Bendett, Yonatan; Gophna, Uri; Gefen, Eran; Hadany, Lilach; Ayali, Amir.

Environ Microbiol ; 24(1): 507-516, 2022 01.

Artigo em Inglês | MEDLINE | ID: mdl-35068041

7.

Adaptation induced by self-targeting in a type I-B CRISPR-Cas system.

Stachler, Aris-Edda; Wörtz, Julia; Alkhnbashi, Omer S; Turgeman-Grott, Israela; Smith, Rachel; Allers, Thorsten; Backofen, Rolf; Gophna, Uri; Marchfelder, Anita.

J Biol Chem ; 295(39): 13502-13515, 2020 09 25.

Artigo em Inglês | MEDLINE | ID: mdl-32723866

8.

Predominantly Antibiotic-resistant Intestinal Microbiome Persists in Patients With Pouchitis Who Respond to Antibiotic Therapy.

Dubinsky, Vadim; Reshef, Leah; Bar, Nir; Keizer, Danielle; Golan, Noam; Rabinowitz, Keren; Godny, Lihi; Yadgar, Karin; Zonensain, Keren; Tulchinsky, Hagit; Gophna, Uri; Dotan, Iris.

Gastroenterology ; 158(3): 610-624.e13, 2020 02.

Artigo em Inglês | MEDLINE | ID: mdl-31605691

9.

The maternal foam plug constitutes a reservoir for the desert locust's bacterial symbionts.

Lavy, Omer; Gophna, Uri; Ayali, Amir; Gihaz, Shalev; Fishman, Ayelet; Gefen, Eran.

Environ Microbiol ; 23(5): 2461-2472, 2021 05.

Artigo em Inglês | MEDLINE | ID: mdl-33645872

10.

Direct sequencing of RNA with MinION Nanopore: detecting mutations based on associations.

Harel, Noam; Meir, Moran; Gophna, Uri; Stern, Adi.

Nucleic Acids Res ; 47(22): e148, 2019 12 16.

Artigo em Inglês | MEDLINE | ID: mdl-31665473

11.

Protein Splicing Activity of the Haloferax volcanii PolB-c Intein Is Sensitive to Homing Endonuclease Domain Mutations.

Robinzon, Shachar; Cawood, Alexandra R; Ruiz, Mercedes A; Gophna, Uri; Altman-Price, Neta; Mills, Kenneth V.

Biochemistry ; 59(36): 3359-3367, 2020 09 15.

Artigo em Inglês | MEDLINE | ID: mdl-32822531

12.

Genomics-based epidemiology of bovine Mycoplasma bovis strains in Israel.

Yair, Yael; Borovok, Ilya; Mikula, Inna; Falk, Rama; Fox, Larry K; Gophna, Uri; Lysnyansky, Inna.

BMC Genomics ; 21(1): 70, 2020 Jan 22.

Artigo em Inglês | MEDLINE | ID: mdl-31969124

13.

Pandemic Bacteremic Escherichia Coli Strains: Evolution and Emergence of Drug-Resistant Pathogens.

Yair, Yael; Gophna, Uri.

Curr Top Microbiol Immunol ; 416: 163-180, 2018.

Artigo em Inglês | MEDLINE | ID: mdl-30046983

14.

Repeat modularity as a beneficial property of multiple CRISPR-Cas systems.

Yair, Yael; Gophna, Uri.

RNA Biol ; 16(4): 585-587, 2019 04.

Artigo em Inglês | MEDLINE | ID: mdl-29923454

15.

The nuts and bolts of the Haloferax CRISPR-Cas system I-B.

Maier, Lisa-Katharina; Stachler, Aris-Edda; Brendel, Jutta; Stoll, Britta; Fischer, Susan; Haas, Karina A; Schwarz, Thandi S; Alkhnbashi, Omer S; Sharma, Kundan; Urlaub, Henning; Backofen, Rolf; Gophna, Uri; Marchfelder, Anita.

RNA Biol ; 16(4): 469-480, 2019 04.

Artigo em Inglês | MEDLINE | ID: mdl-29649958

16.

High tolerance to self-targeting of the genome by the endogenous CRISPR-Cas system in an archaeon.

Stachler, Aris-Edda; Turgeman-Grott, Israela; Shtifman-Segal, Ella; Allers, Thorsten; Marchfelder, Anita; Gophna, Uri.

Nucleic Acids Res ; 45(9): 5208-5216, 2017 May 19.

Artigo em Inglês | MEDLINE | ID: mdl-28334774

17.

Impact of a homing intein on recombination frequency and organismal fitness.

Naor, Adit; Altman-Price, Neta; Soucy, Shannon M; Green, Anna G; Mitiagin, Yulia; Turgeman-Grott, Israela; Davidovich, Noam; Gogarten, Johann Peter; Gophna, Uri.

Proc Natl Acad Sci U S A ; 113(32): E4654-61, 2016 08 09.

Artigo em Inglês | MEDLINE | ID: mdl-27462108

18.

Oscillospira and related bacteria - From metagenomic species to metabolic features.

Gophna, Uri; Konikoff, Tom; Nielsen, Henrik Bjørn.

Environ Microbiol ; 19(3): 835-841, 2017 03.

Artigo em Inglês | MEDLINE | ID: mdl-28028921

19.

Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.

Oberhardt, Matthew A; Zarecki, Raphy; Reshef, Leah; Xia, Fangfang; Duran-Frigola, Miquel; Schreiber, Rachel; Henry, Christopher S; Ben-Tal, Nir; Dwyer, Daniel J; Gophna, Uri; Ruppin, Eytan.

PLoS Comput Biol ; 12(1): e1004705, 2016 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-26821166

20.

Reply.

Dubinsky, Vadim; Gophna, Uri; Dotan, Iris.

Gastroenterology ; 159(1): 401-402, 2020 07.

Artigo em Inglês | MEDLINE | ID: mdl-32302612

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